Phylogenetic and expression analysis of the NPR1-like gene family from Persea americana (Mill.).
Identifieur interne : 000E03 ( Main/Exploration ); précédent : 000E02; suivant : 000E04Phylogenetic and expression analysis of the NPR1-like gene family from Persea americana (Mill.).
Auteurs : Robert Backer [Afrique du Sud] ; Waheed Mahomed [Afrique du Sud] ; Bianca J. Reeksting [Afrique du Sud] ; Juanita Engelbrecht [Afrique du Sud] ; Enrique Ibarra-Laclette [Mexique] ; Noëlani Van Den Berg [Afrique du Sud]Source :
- Frontiers in plant science [ 1664-462X ] ; 2015.
Abstract
The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) forms an integral part of the salicylic acid (SA) pathway in plants and is involved in cross-talk between the SA and jasmonic acid/ethylene (JA/ET) pathways. Therefore, NPR1 is essential to the effective response of plants to pathogens. Avocado (Persea americana) is a commercially important crop worldwide. Significant losses in production result from Phytophthora root rot, caused by the hemibiotroph, Phytophthora cinnamomi. This oomycete infects the feeder roots of avocado trees leading to an overall decline in health and eventual death. The interaction between avocado and P. cinnamomi is poorly understood and as such limited control strategies exist. Thus uncovering the role of NPR1 in avocado could provide novel insights into the avocado - P. cinnamomi interaction. A total of five NPR1-like sequences were identified. These sequences were annotated using FGENESH and a maximum-likelihood tree was constructed using 34 NPR1-like protein sequences from other plant species. The conserved protein domains and functional motifs of these sequences were predicted. Reverse transcription quantitative PCR was used to analyze the expression of the five NPR1-like sequences in the roots of avocado after treatment with salicylic and jasmonic acid, P. cinnamomi infection, across different tissues and in P. cinnamomi infected tolerant and susceptible rootstocks. Of the five NPR1-like sequences three have strong support for a defensive role while two are most likely involved in development. Significant differences in the expression profiles of these five NPR1-like genes were observed, assisting in functional classification. Understanding the interaction of avocado and P. cinnamomi is essential to developing new control strategies. This work enables further classification of these genes by means of functional annotation and is a crucial step in understanding the role of NPR1 during P. cinnamomi infection.
DOI: 10.3389/fpls.2015.00300
PubMed: 25972890
PubMed Central: PMC4413732
Affiliations:
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Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria</wicri:regionArea><wicri:noRegion>University of Pretoria Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Mahomed, Waheed" sort="Mahomed, Waheed" uniqKey="Mahomed W" first="Waheed" last="Mahomed">Waheed Mahomed</name><affiliation wicri:level="1"><nlm:affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria</wicri:regionArea><wicri:noRegion>University of Pretoria Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Reeksting, Bianca J" sort="Reeksting, Bianca J" uniqKey="Reeksting B" first="Bianca J" last="Reeksting">Bianca J. Reeksting</name><affiliation wicri:level="1"><nlm:affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria</wicri:regionArea><wicri:noRegion>University of Pretoria Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Engelbrecht, Juanita" sort="Engelbrecht, Juanita" uniqKey="Engelbrecht J" first="Juanita" last="Engelbrecht">Juanita Engelbrecht</name><affiliation wicri:level="1"><nlm:affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria</wicri:regionArea><wicri:noRegion>University of Pretoria Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Ibarra Laclette, Enrique" sort="Ibarra Laclette, Enrique" uniqKey="Ibarra Laclette E" first="Enrique" last="Ibarra-Laclette">Enrique Ibarra-Laclette</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio Nacional de Genómica para la Biodiversidad-Langebio/Unidad de Genómica Avanzada, Centro de Investigación y Estudios Avanzados del - Instituto Politécnico Nacional Irapuato, México ; Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Xalapa, México.</nlm:affiliation><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad-Langebio/Unidad de Genómica Avanzada, Centro de Investigación y Estudios Avanzados del - Instituto Politécnico Nacional Irapuato, México ; Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Xalapa</wicri:regionArea><wicri:noRegion>Xalapa</wicri:noRegion></affiliation></author><author><name sortKey="Van Den Berg, Noelani" sort="Van Den Berg, Noelani" uniqKey="Van Den Berg N" first="Noëlani" last="Van Den Berg">Noëlani Van Den Berg</name><affiliation wicri:level="1"><nlm:affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria</wicri:regionArea><wicri:noRegion>University of Pretoria Pretoria</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) forms an integral part of the salicylic acid (SA) pathway in plants and is involved in cross-talk between the SA and jasmonic acid/ethylene (JA/ET) pathways. Therefore, NPR1 is essential to the effective response of plants to pathogens. Avocado (Persea americana) is a commercially important crop worldwide. Significant losses in production result from Phytophthora root rot, caused by the hemibiotroph, Phytophthora cinnamomi. This oomycete infects the feeder roots of avocado trees leading to an overall decline in health and eventual death. The interaction between avocado and P. cinnamomi is poorly understood and as such limited control strategies exist. Thus uncovering the role of NPR1 in avocado could provide novel insights into the avocado - P. cinnamomi interaction. A total of five NPR1-like sequences were identified. These sequences were annotated using FGENESH and a maximum-likelihood tree was constructed using 34 NPR1-like protein sequences from other plant species. The conserved protein domains and functional motifs of these sequences were predicted. Reverse transcription quantitative PCR was used to analyze the expression of the five NPR1-like sequences in the roots of avocado after treatment with salicylic and jasmonic acid, P. cinnamomi infection, across different tissues and in P. cinnamomi infected tolerant and susceptible rootstocks. Of the five NPR1-like sequences three have strong support for a defensive role while two are most likely involved in development. Significant differences in the expression profiles of these five NPR1-like genes were observed, assisting in functional classification. Understanding the interaction of avocado and P. cinnamomi is essential to developing new control strategies. This work enables further classification of these genes by means of functional annotation and is a crucial step in understanding the role of NPR1 during P. cinnamomi infection. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">25972890</PMID><DateCompleted><Year>2015</Year><Month>05</Month><Day>14</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic and expression analysis of the NPR1-like gene family from Persea americana (Mill.).</ArticleTitle><Pagination><MedlinePgn>300</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2015.00300</ELocationID><Abstract><AbstractText>The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) forms an integral part of the salicylic acid (SA) pathway in plants and is involved in cross-talk between the SA and jasmonic acid/ethylene (JA/ET) pathways. Therefore, NPR1 is essential to the effective response of plants to pathogens. Avocado (Persea americana) is a commercially important crop worldwide. Significant losses in production result from Phytophthora root rot, caused by the hemibiotroph, Phytophthora cinnamomi. This oomycete infects the feeder roots of avocado trees leading to an overall decline in health and eventual death. The interaction between avocado and P. cinnamomi is poorly understood and as such limited control strategies exist. Thus uncovering the role of NPR1 in avocado could provide novel insights into the avocado - P. cinnamomi interaction. A total of five NPR1-like sequences were identified. These sequences were annotated using FGENESH and a maximum-likelihood tree was constructed using 34 NPR1-like protein sequences from other plant species. The conserved protein domains and functional motifs of these sequences were predicted. Reverse transcription quantitative PCR was used to analyze the expression of the five NPR1-like sequences in the roots of avocado after treatment with salicylic and jasmonic acid, P. cinnamomi infection, across different tissues and in P. cinnamomi infected tolerant and susceptible rootstocks. Of the five NPR1-like sequences three have strong support for a defensive role while two are most likely involved in development. Significant differences in the expression profiles of these five NPR1-like genes were observed, assisting in functional classification. Understanding the interaction of avocado and P. cinnamomi is essential to developing new control strategies. This work enables further classification of these genes by means of functional annotation and is a crucial step in understanding the role of NPR1 during P. cinnamomi infection. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Backer</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mahomed</LastName><ForeName>Waheed</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reeksting</LastName><ForeName>Bianca J</ForeName><Initials>BJ</Initials><AffiliationInfo><Affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Engelbrecht</LastName><ForeName>Juanita</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ibarra-Laclette</LastName><ForeName>Enrique</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Laboratorio Nacional de Genómica para la Biodiversidad-Langebio/Unidad de Genómica Avanzada, Centro de Investigación y Estudios Avanzados del - Instituto Politécnico Nacional Irapuato, México ; Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Xalapa, México.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>van den Berg</LastName><ForeName>Noëlani</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa ; Department of Genetics, Fruit Tree Biotechnology Program, University of Pretoria Pretoria, South Africa.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>04</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">NPR1</Keyword><Keyword MajorTopicYN="N">Phytophthora cinnamomi</Keyword><Keyword MajorTopicYN="N">avocado</Keyword><Keyword MajorTopicYN="N">expression analysis</Keyword><Keyword MajorTopicYN="N">jasmonic acid</Keyword><Keyword MajorTopicYN="N">pathogenesis-related</Keyword><Keyword MajorTopicYN="N">salicylic acid</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>01</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>04</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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Sud</li><li>Mexique</li></country></list><tree><country name="Afrique du Sud"><noRegion><name sortKey="Backer, Robert" sort="Backer, Robert" uniqKey="Backer R" first="Robert" last="Backer">Robert Backer</name></noRegion><name sortKey="Engelbrecht, Juanita" sort="Engelbrecht, Juanita" uniqKey="Engelbrecht J" first="Juanita" last="Engelbrecht">Juanita Engelbrecht</name><name sortKey="Mahomed, Waheed" sort="Mahomed, Waheed" uniqKey="Mahomed W" first="Waheed" last="Mahomed">Waheed Mahomed</name><name sortKey="Reeksting, Bianca J" sort="Reeksting, Bianca J" uniqKey="Reeksting B" first="Bianca J" last="Reeksting">Bianca J. Reeksting</name><name sortKey="Van Den Berg, Noelani" sort="Van Den Berg, Noelani" uniqKey="Van Den Berg N" first="Noëlani" last="Van Den Berg">Noëlani Van Den Berg</name></country><country name="Mexique"><noRegion><name sortKey="Ibarra Laclette, Enrique" sort="Ibarra Laclette, Enrique" uniqKey="Ibarra Laclette E" first="Enrique" last="Ibarra-Laclette">Enrique Ibarra-Laclette</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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